species:   Rhsol
pid:       PID0489
parent:    Rhi-milR-15
paralog:   
locus:     KB317821.1:25309-25396
matures:   ['AGAAUGGGCUUGCAUGAACAGG', 'UGGACAGACAAGCUUCUGUUGG']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317821.1:25309-25396

1 out of bounds
29 alignments
27 proper strand
24 stranded perfect matches

       *************************                      *************************         
UGAAGUGCCUAGAAUGGGCUUGCAUGAACAGGUUUAGCAACUGGGACAAUGCAAUUUGGACAGACAAGCUUCUGUUGGGGACUGACAA
...(((.(((((...(((((((..((..((((((..(((..........)))))))))..))..)))))))...))))).))).....
----------AGAAUGGGCUUGCAUGAACAGG-------------------------------------------------------- l=22 a=0 c
--------------------------------------------------------UGGACAGACAAGCUUCUGUUGG---------- l=22 a=0 c*
--------------------------------UUUAGCAACUGGGACAAUGCA----------------------------------- l=21 a=10 ma
--------------------------------------------------------UGGACAGACAAGCUUCUGUUGG---------- l=22 a=0 ma*

------------------------------------------------------------CAGACAAGCUUCUGUUGGGGACUGAC-- l=26 a=1 
---------------------------------UUAGCAACUGGGACAAUGCA----------------------------------- l=20 a=2 
--------------------------------UUUAGCAACUGGGACAAUGC------------------------------------ l=20 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCA----------------------------------- l=21 a=10 (ma)
--------------------------------UUUAGCAACUGGGACAAUGCg----------------------------------- l=21 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCAA---------------------------------- l=22 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCAAU--------------------------------- l=23 a=1 
--------------------------------UUUAGCAACUGGGACAAUGCAAUUUG------------------------------ l=26 a=1 
-----------------------------AGGUUUAGCAACUGGGACAAUGC------------------------------------ l=23 a=1 
-------------AUGGGCUUGCAUGAACcGGUUUAG--------------------------------------------------- l=24 a=1 
---------UAGAAUGGGCUUGCAUGAAC----------------------------------------------------------- l=20 a=1 
---------UAGAAUGGGCUUGCAUGAACA---------------------------------------------------------- l=21 a=1 
---------UAGAAUGGGCUUGCAUGAACAGG-------------------------------------------------------- l=23 a=4 
-------uCUAGAAUGGGCUUGCAUGAAC----------------------------------------------------------- l=22 a=1 

mb-00110
ax-1001011
ku-01
ss-111111101100
fn-111
